Research Assistant (Praedoc) (m/f/d)

☞ Freie Universität Berlin

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Giorno di aggiornamento: 07-10-2024

Località: Berlin

Categoria: Farmaceutico / Chimico / Biotech Arte / Design Lavoratrice Mezza giornata

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Tipo di lavoro: Teilzeit

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Contenuto del lavoro

Freie Universität Berlin-Fachbereich Physik - Institut für Theoretische Physik / AG Clementi - Theoretische und rechnergestützte Biophysik

The Clementi’s group in the Physics Department at Freie Universität Berlin seeks a predoctoral researcher to work on the development and application of coarse-graining methodologies to study macromolecular dynamics with machine learning. Our group works on the definition and implementation of strategies to study complex biophysical processes on long timescales. We use data-driven methods for systematic coarse-graining of macromolecular systems, to bridge molecular and cellular scales. We work on a theoretical formulation to exploit the complementary information that can be obtained in simulation and experiment, to combine the approximate but high-resolution structural and dynamical information from computational models with the “exact” but lower resolution information available from experiments.
Research Assistant (Praedoc) (m/f/d)

Working field:

  • use of machine learning approaches for transferable coarse-grained models of proteins and application to protein folding systems (WP7)
  • application of specially developed approaches to define coarse-grained protein models with machine learning (WP8)
The project is part of the research of Clementi’s group supported by the Einstein Foundation Berlin. The candidate will use machine learning approaches (both deep neural network architectures and kernel methods) to design representations and transferable energy models for proteins. Different resolutions will be explored. The models will then be used to study specific protein systems in collaboration with experimental groups.

Requirements:

  • Completed scientific studies and University degree (M.sc.) in computional biophysics, biochemistry, chemistry or equivalent degrees.

Desirable:
  • Previous experience with macromolecular modeling and molecular dynamics simulations
  • Experience with software packages for molecular dynamics and quantum chemical calculations, and with the analysis of large amount of simulation data
  • Knowledge of an object-oriented programming language (Phyton preferred)
  • English language fluent, spoken and written.

How to apply:

Applications should be sent by e-mail, together with significant documents, indicating the reference code, in PDF format (preferably as one document) no later than September 20th, 2021 to Mrs. Prof. Dr. Cecilia Clementi: ammonlassen@physik.fu-berlin.de.
On the given occasion and for the duration of the essential on-site operations by Freie Universität Berlin, we kindly ask you to apply electronically by e-mail. The processing of a postal application cannot be guaranteed.

Freie Universität Berlin
Fachbereich Physik
Institut für Theoretische Physik
AG Clementi - Theoretische und rechnergestützte Biophysik
Mrs. Prof. Dr. Cecilia Clementi
Arnimallee 14
14195 Berlin (Dahlem)

With an electronic application, you acknowledge that FU Berlin saves and processes your data. FU Berlin cannot guarantee the security of your personal data if you send your application over an unencrypted connection.

Freie Universität Berlin is an equal opportunity employer.
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Scadenza: 21-11-2024

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